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Functional magnetic resonance imaging measures signal increases arising from a variety of interrelated effects and physiological sources. Recently there has been some success in disentangling this signal in order to quantify baseline physiological parameters, including the resting oxygen extraction fraction (OEF), cerebral blood volume (CBV) and mean vessel size. However, due to the complicated nature of the signal, each of these methods relies on certain physiological assumptions to derive a solution. In this work we present a framework for the simultaneous, voxelwise measurement of these three parameters. The proposed method removes the assumption of a fixed vessel size from the quantification of OEF and CBV, while simultaneously removing the need for an assumed OEF in the calculation of vessel size. The new framework is explored through simulations and validated with a pilot study in healthy volunteers. The MRI protocol uses a combined hyperoxia and hypercapnia paradigm with a modified spin labelling sequence collecting multi-slice gradient echo and spin echo data.

Original publication




Journal article



Publication Date





132 - 142


Hypercapnia, Hyperoxia, OEF, Oxygen extraction fraction, Vessel size, fMRI, Adult, Blood Flow Velocity, Blood Volume, Blood Volume Determination, Cerebral Arteries, Cerebrovascular Circulation, Female, Humans, Hypercapnia, Hyperoxia, Imaging, Three-Dimensional, Magnetic Resonance Imaging, Male, Organ Size, Oximetry, Oxygen, Reproducibility of Results, Sensitivity and Specificity