Publications — Radcliffe Department of Medicine

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Neuropeptide S receptor 1 is a nonhormonal treatment target in endometriosis.

Tapmeier TT. et al, (2021), Sci Transl Med, 13

Multi Locus View: an extensible web-based tool for the analysis of genomic data.

Sergeant MJ. et al, (2021), Commun Biol, 4

A unified haplotype-based method for accurate and comprehensive variant calling.

Cooke DP. et al, (2021), Nat Biotechnol

Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma.

Roberts HE. et al, (2021), Sci Rep, 11

Demographic inference from multiple whole genomes using a particle filter for continuous Markov jump processes.

Henderson D. et al, (2021), PLoS One, 16

DeepC: predicting 3D genome folding using megabase-scale transfer learning.

Schwessinger R. et al, (2020), Nat Methods, 17, 1118 - 1124

Multi Locus View : An Extensible Web Based Tool for the Analysis of Genomic Data

Sergeant MJ. et al, (2020)

Inferring B cell specificity for vaccines using a Bayesian mixture model.

Fowler A. et al, (2020), BMC Genomics, 21

Repertoire-wide phylogenetic models of B cell molecular evolution reveal evolutionary signatures of aging and vaccination

PYBUS O. et al, (2019), PNAS

DeepC: Predicting chromatin interactions using megabase scaled deep neural networks and transfer learning

Schwessinger R. et al, (2019)

Sequencing of human genomes with nanopore technology.

Bowden R. et al, (2019), Nat Commun, 10

Haplotype matching in large cohorts using the Li and Stephens model.

Lunter G., (2019), Bioinformatics, 35, 798 - 806

Efficient inference in state-space models through adaptive learning in online Monte Carlo expectation maximization

Henderson D. and Lunter G., (2019), Computational Statistics

Non-Mendelian Causes of Temporal Lobe Epilepsy

Krestel H. et al, (2018), EPILEPSIA, 59, S316 - S316

An Equivariant Bayesian Convolutional Network predicts recombination hotspots and accurately resolves binding motifs.

Brown R. and Lunter G., (2018), Bioinformatics

A unified haplotype-based method for accurate and comprehensive variant calling

Cooke D. et al, (2018)

Efficient convergence through adaptive learning in sequential Monte Carlo Expectation Maximization

Henderson D. and Lunter G., (2018)

A high throughput screen for active human transposable elements.

Kvikstad EM. et al, (2018), BMC Genomics, 19

A Phylogenetic Codon Substitution Model for Antibody Lineages.

Hoehn KB. et al, (2017), Genetics, 206, 417 - 427

Accurate clinical detection of exon copy number variants in a targeted NGS panel using DECoN.

Fowler A. et al, (2016), Wellcome Open Res, 1

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