Xiao Qin
BSc DPhil
Junior Group Leader in Cancer Biology
Engineering Precancer for Causal Discovery
I joined the MRC Translational Immune Discovery Unit (TIDU), MRC WIMM, as a junior group leader in February 2024. My research uses organoid models and multiomic single-cell technologies to understand how cell-intrinsic and cell-extrinsic signals regulate epithelial cell plasticity in the human colon. Ultimately, I aspire to understand how this regulation dictates the progression of precancerous lesions towards tumourigenesis.
During my PhD research as a cancer biologist, I used animal and cell models to study cell-autonomous and non-autonomous mechanisms of colonic inflammation and tumourigenesis. During that time, I developed a deep appreciation for the power of simple model systems, particularly organoids, in addressing complex biological questions. As an ex vivo model system, organoids strike an excellent balance between experimental flexibility and physiological relevance, making them a versatile tool for studying various aspects of epithelial biology, including cell-cell communication and cell plasticity. Since then, I have dedicated my research to developing and applying cutting-edge single-cell technologies to organoids to fully exploit their potential as biomimetic models.
In this new era of advanced single-cell technologies, the organoid model is faced with continuously evolving challenges and opportunities. To harness the potential of these two fascinating fields, I will adopt an engineering approach to generate organoid models for streamlined, functional single-cell analysis. Specifically, I will use the CRISPR technology to engineer different cell populations in the precancerous microenvironment, deciphering cell-intrinsic and extrinsic mechanisms of field cancerisation.
Areas of Expertise
- Cancer biology
- Stem cell biology
- Cell signalling
- Heterocellular organoid culture and co-culture
- Mass cytometry and high-dimensional signalling analysis
- Next-generation single-cell sequencing technologies
Key publications
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An oncogenic phenoscape of colonic stem cell polarization.
Journal article
Qin X. et al, (2023), Cell, 186, 5554 - 5568.e18
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Cell-type-specific signaling networks in heterocellular organoids.
Journal article
Qin X. et al, (2020), Nat Methods, 17, 335 - 342
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Spatial fibroblast niches define Crohn's fistulae.
Journal article
McGregor C. et al, (2025), Nature
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Functional analysis of cell plasticity using single-cell technologies.
Journal article
Qin X. and Tape CJ., (2024), Trends Cell Biol, 34, 854 - 864
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Deciphering Organoids: High-Dimensional Analysis of Biomimetic Cultures.
Journal article
Qin X. and Tape CJ., (2021), Trends Biotechnol, 39, 774 - 787
Recent publications
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Phenoscaping Reveals Multimodal γδ T-cell Cytotoxicity as a Strategy to Overcome Cancer Cell-Mediated Immunomodulation.
Journal article
Nattress CB. et al, (2025), Cancer Res, 85, 4415 - 4432
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Spatial fibroblast niches define Crohn's fistulae.
Journal article
McGregor C. et al, (2025), Nature
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Oncogenic PIK3CA corrupts growth factor signaling specificity.
Journal article
Madsen RR. et al, (2025), Mol Syst Biol, 21, 126 - 157
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Functional analysis of cell plasticity using single-cell technologies.
Journal article
Qin X. and Tape CJ., (2024), Trends Cell Biol, 34, 854 - 864
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Deficiency of factor-inhibiting HIF creates a tumor-promoting immune microenvironment.
Journal article
Ma J. et al, (2024), Proc Natl Acad Sci U S A, 121
