Yuqi Shen
Postdoctoral Researcher
I joined the Psaila and Mead groups in October 2022 after finishing my PhD with Prof. Richard Gibbons and Prof. Douglas Higgs at the WIMM, Oxford. During my PhD, I worked on how the chromatin remodeller ATRX regulates gene expression.
In my current postdoctoral work, I am interested in the molecular mechanisms underlying blood cancer development, with particular focuses on how mutations in haematopoietic stem cells reshape gene regulatory programmes intrinsically and remodel the bone marrow microenvironment extrinsically to drive disease progression. I am applying my experience in gene regulation in a more translational setting, developing iPSC-based model systems carrying patient-specific mutations and differentiating them into functional haematopoietic stem cells to trace disease progression and identify early molecular events that could inform preventive or targeted therapies. In parallel, I am combining this with an advanced 3D human bone marrow organoid model to study how interactions within the niche influence disease progression and therapeutic responses.
Recent publications
CAR T cell therapy selectively depletes disease-driving mutant calreticulin cells in xenotransplants and human organoid models of myelofibrosis.
Journal article
Rampotas A. et al, (2026), Sci Transl Med, 18
comBO: A combined human bone and lympho-myeloid bone marrow organoid for preclinical modeling of hematopoietic disorders.
Journal article
Shen Y. et al, (2026), Cell Stem Cell, 33, 421 - 437.e7
ATRX loss couples genome instability at a G-rich repeat to dysregulation of human alpha-globin expression.
Journal article
Shen Y. et al, (2026), Nat Commun, 17
Genome editing for treatment of JAK2 V617F-driven myeloproliferative neoplasms
Preprint
Doll RM. et al, (2025)
Human Multi-Organoid Platform to Model Immune Dynamics in Cardiac Injury and Disease.
Journal article
Reyat JS. et al, (2025), Circ Res, 137, 1133 - 1136
Perturbing LSD1 and WNT rewires transcription to synergistically induce AML differentiation.
Journal article
Hosseini A. et al, (2025), Nature, 642, 508 - 518