Colleges
Zhiyuan Hu
DPhil; BSc
Postdoctoral Researcher in Developmental Genomics
One long-standing question within the field of developmental biology is to understand how a particular cell develops into a final cell type, known as cell fate decisions. To study this question, I am using an embryonic cell population, called the neural crest, as my model system. The neural crest exists in all vertebrates and exhibits extraordinary multipotency. It contributes to critical structures, e.g., the peripheral nervous system and the craniofacial skeleton. Dysfunctional development of the neural crest leads to birth defects, such as a cleft lip and palate. I am leveraging the state-of-the-art techniques, including single-cell sequencing, CRISPR and machine learning, to characterise developmental trajectories and lineages of neural crest cells. My work aims to shed light on general mechanisms involved in cell fate commitment and maintenance during normal development. It will also provide insights into inherited developmental abnormalities and malignancy.
Key publications
CIDER: an interpretable meta-clustering framework for single-cell RNA-seq data integration and evaluation.
Journal article
Hu Z. et al, (2021), Genome Biol, 22
The Oxford Classic Links Epithelial-to-Mesenchymal Transition to Immunosuppression in Poor Prognosis Ovarian Cancers.
Journal article
Hu Z. et al, (2021), Clin Cancer Res, 27, 1570 - 1579
Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution.
Journal article
Liu Y. et al, (2021), Nat Commun, 12
The Repertoire of Serous Ovarian Cancer Non-genetic Heterogeneity Revealed by Single-Cell Sequencing of Normal Fallopian Tube Epithelial Cells.
Journal article
Hu Z. et al, (2020), Cancer Cell, 37, 226 - 242.e7
pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay.
Journal article
Hu Z. et al, (2017), Nat Commun, 8
Recent publications
Whole-genome methylation profiling of extracellular vesicle DNA in gastric cancer identifies intercellular communication features.
Journal article
Lin B. et al, (2025), Nat Commun, 16
Iron-doped carbon dots with peroxidase activity for colorimetric and fluorometric dual-signal detection of tannic acid
Journal article
Deng X. et al, (2025), Diamond and Related Materials, 157
Comprehensive Integrated Analysis Reveals the Spatiotemporal Microevolution of Cancer Cells in Patients with Bone-Metastatic Prostate Cancer.
Journal article
Feng Y. et al, (2025), Biomedicines, 13
Thionation of conjugated porphyrin with enhanced photodynamic and photothermal effects for cancer therapy
Journal article
Tong S. et al, (2025), Journal of Photochemistry and Photobiology A: Chemistry, 459
Insights into the role of MSLN-positive circulating tumor cell as an auxiliary diagnostic biomarker in epithelial ovarian cancer.
Journal article
Xu H. et al, (2025), Front Oncol, 15
