Generalisation of automatic tumour segmentation in histopathological whole-slide images across multiple cancer types.
Skrede O-J., Pradhan M., Isaksen MX., Hveem TS., Vlatkovic L., Nesbakken A., Lindemann K., Kristensen GB., Kasius J., Zeimet AG., Brustugun OT., Busund L-TR., Richardsen EH., Haug ES., Brennhovd B., Rewcastle E., Lillesand M., Kvikstad V., Janssen E., Kerr DJ., Liestøl K., Albregtsen F., Kleppe A.
Deep learning is expected to aid pathologists in tasks such as tumour segmentation. We developed a general tumour segmentation model for histopathological images and examined its performance in different cancer types. The model was developed using over 20,000 whole-slide images from over 4000 patients with colorectal, endometrial, lung, or prostate carcinoma. Performance was validated in pre-planned analyses on external cohorts with over 3000 patients across six cancer types. Exploratory analyses included over 1500 additional patients from The Cancer Genome Atlas. Average Dice coefficient was over 80% in all validation cohorts with en bloc resection specimens and in The Cancer Genome Atlas cohorts. No performance loss was observed when comparing the general model with single-cancer models specialised in cancer types from the development set. In conclusion, extensive and rigorous evaluations demonstrate that generic tumour segmentation by a single model is possible across cancer types, patient populations, sample preparations and slide scanners.